PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 1446aa    MW: 159874 Da    PI: 6.6858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938428genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18359458198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv+++
  462938428 359 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGF 456
                99**************************555567778***************9989999999***9.********************887.777778777 PP

                E- CS
         B3  97 fr 98 
                ++
  462938428 457 RK 458
                76 PP

2B358.51.2e-18859958198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv+++
  462938428 859 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGF 956
                99**************************555567778***************9989999999***9.********************887.777778777 PP

                E- CS
         B3  97 fr 98 
                ++
  462938428 957 RK 958
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-31351468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-21356459IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-23357458No hitNo description
PfamPF023628.4E-16359458IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589359460IPR003340B3 DNA binding domain
SMARTSM010191.5E-22359459IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-31851968IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-21856959IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-23857958No hitNo description
PfamPF023628.4E-16859958IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589859960IPR003340B3 DNA binding domain
SMARTSM010191.5E-22859959IPR003340B3 DNA binding domain
PROSITE profilePS5105015.04211201170IPR011124Zinc finger, CW-type
PfamPF074964.7E-1311251167IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1446 aa     Download sequence    Send to blast
MAAKRCMNPA CGAPAPGPGG GGDWRKGWPL RSGAFALLCD KCGLAYEQLV FCDIFHQKES  60
GWRDCSFCAK RLHCGCIASK NSYDLLDGGG VQCVTCMKNS AAHSVSGQGA PKLFPSQSSL  120
RFLGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF MLRNIEVGQS SSFLRQKEIE  180
NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR DDSKDPTTDS TTSESLSEAC  240
LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS LSPFQHAQRA RNFLTRPPRV  300
GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE  360
KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD ARGKEWHFQF RFWPNNNSRM  420
YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT NTVSLPDSQI SAIANGSLLS  480
ETLFSSTNEN LSVVSGYPGF FQSIKGAADL HSSSLYDHHV NSADGDVSWL KTDKFGSRPD  540
EGSLRFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE LLRPAPTSKP TVVTIEDYEF  600
EEYDVSGQGT PKLFPSQNSL QFFGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF  660
MLRNIEVGQS SSFLRQKEIE NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR  720
DDSKDPTTDS TTSESLSEAC LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS  780
LSPFQHAQRA RNFLTRPPRV GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT  840
DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD  900
ARGKEWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT  960
NTVSLPDSQI SAIANGSLLS ETLFSSANEN LSVVSGYPGF IQSIKGAADL HSSSLYDHHV  1020
NSADGDVSWL KTDKFGSRPD EGSLQFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE  1080
LLRPAPTAKP TVVTIEDYEF EEYDEPPVFA KRSIFTVRAT GEQDQWIQCD DCSKWRRLPL  1140
NVIVASKWTC TDNSWDPKSS SCSAPEELTP KELQSVLQQY EEMRRRKGSS YGLKLNVAEM  1200
DASSLDALAT AAVYGEAGNQ GTAVATTTKH PRHRPGCTCI VCIQPPSGKG PKHNPSCTCN  1260
VCMTVKRRFK TLMMRKKQRQ SEREEAEASK KIQWMNRDEP EGSSLSRSPQ TLDTTRDSDV  1320
TMFDKVPETN KGHIDLNFHP TVRDDQEQHG SQPRPVSMMG LLEVATRPLE NYMKQNGLTS  1380
LAGEQGGSPS TVTAPPAPVE SEERTSNENR VASVEREREP DAMAIDEAGE NQQEKASDDA  1440
VAATAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1235894513102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112651276KRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0PREDICTED: B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGSi028834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-176HSI2-like 1